@extends("base.html") @require(htmlbase, view, pluginbase) @def content():
WikiPathways1 is a open, collaborative pathway wiki for the exchange, development and maintenance of pathway information by the biological community. Pathways are stored in GenMAPP Pathway Markup Language (GPML)2 format used by the GenMAPP software and the PathVisio pathway layout software.
This plugin allows the import of GPML pathways from saved files (e.g. exported from PathVisio) or alternatively directly from WikiPathways via the WikiPathways web service3
Pathways can be loaded from local .gpml files or from the web service available via the
WikiPathways button on the toolbar.
Metabolite, gene or protein annotations and identities are loaded from the GPML file and mapped to known database entities (e.g. HMDB, CAS)
where they exist in the current database.
If a data source is connected to the visualisation the relative metabolite concentrations will be shown with an adapted scale. Scaling and colour schemes can be altered using the scaling toolbar.